SPEAR Training Programme

Course materials and webpages

Location and date

Third Institute of Oceanography, Xiamen, 15th-22nd March 2006

Programme, course materials and webpages

   
   
Date March 15th-March 22nd 2006
Location Xiamen, China
Venues

March 14th - Arrival in Xiamen, Meeting for course lecturers
March 15th - Opening session, Training
March 16th - Training
March 17th - Training

    
Agenda

Tuesday March 14th 2006 - Venue: Peony Wanpeng Hotel, Xiamen

 

Day 0 Afternoon
  14.30-16.00

Meeting for course lecturers and participants (15.30-17.00)

All training will be held at the Third Institute of Oceanography in Xiamen, except Session 3a which will be held at the Peony Wanpeng Hotel. Primarily, the training is targeted at SPEAR participants, although trainees may also take part at the discretion of the SPEAR partnership. In order to ensure that the training sessions are of maximum value, it is suggested that attendance should be limited (indicatively) to no more than 15 people.

Wednesday March 15th 2006 - Venue: Morning: Peony Wanpeng Hotel, Xiamen, Afternoon (Training) Third Institute of Oceanography, Xiamen.

  
Day 1 Afternoon
 T1   Training - Session 1 (14.00-17.30)
   

In the GIS training session a tutorial will be carried out with the most common GIS operations for coastal ecosystem analysis and for the setup of ecological models:
1. Morphological analysis of the ecosystem;
2. Display of sampling stations;
3. Interpolation of variables.

Logistics:

One computer for every 3-4 participants and trainees, with ArcMap 9.0 installed. One data projector.

Student evaluation (1 - worst, 4 - best):

Replies: 6
Material: 3.8
Teaching: 3.6
Exercises: 3.4

IMAR
... 14.00-15.30 Geographical Information Systems

Ana Nobre

  15.30-15.45 Afternoon tea
... 15.45-17.30 Geographical Information Systems

Ana Nobre

Thursday March 16th 2006 - Venues:Third Institute of Oceanography and Peony Wanpeng Hotel , Xiamen

  
Day 2 Morning
T2   Training - Session 2 (09.00-12.00) - Third Institute of Oceanography
   

This course is a primer on the use of visual simulation packages such as Powersim or Stella for the development of ecological models. We will review the various components of a model:1. Scope in time and space, initial conditions and boundary conditions;2. Forcing functions, processes, state variables and parameters.The participants and trainees (in groups of 3-4 depending on numbers and facilities) will implement very simple models on the computer as case studies to illustrate these points. If time allows, there will be a brief overview of calibration and validation.

Logistics:

One computer for every 3-4 participants and trainees, with Excel installed. The visual software PowerSim will be supplied for the course. All software needs to be installed the day before training (at the latest). One data projector.

Student evaluation (1 - worst, 4 - best):

Replies: 7
Material: 3.6
Teaching: 3.6
Exercises: 3.3

IMAR, NU
... 9.00-10.30 Visual Ecological Modelling J.G.Ferreira, Chen Ye
  10.30-10.45 Coffee break
... 10.45-12.00 Visual Ecological Modelling J.G.Ferreira, Chen Ye
  12.30-14.00 Lunch break
Day 2 Afternoon
 T3  

Training - Session 3a and 3b in parallel (14.00-17.30)
Session 3a -
Peony Wanpeng Hotel (meeting room level 5)
Session 3b - Third Institute of Oceanography


T3a Shellfish Modelling

This session will address the modeling of feeding and growth in filter-feeding bivalve shellfish. Using Stella, we will:
1. Define component forcing functions, processes, state variables and parameters that are relevant to modeling feeding and growth in bivalve shellfish.
2. Review an example model for the Chinese scallop Chlamys farreri.
3. Compare the relative sensitivities of different model components.
4. Visualise and experiment with the consequences of environmental change.
5. Address how to upscale from individual to population models, as well as how to integrate with simple hydrodynamic effects to predict consequences of shellfish density at the farm-scale.

Logistics:

One computer for every 3-4 participants and trainees, with Stella installed. Stella can be supplied for the course, to be installed the day before training. One data projector.

Student evaluation (1 - worst, 4 - best):

Replies: 3
Material: 3.0
Teaching: 2.7
Exercises: 3.0

PML, FIO, IMAR
T3b Environmental Impact Modelling

This session will present the theory behind the MOM model system. The MOM model was developed in Norway in the 1990’s to regulate the environmental impact of marine fish farming and the interaction between fish farming and other activities using the same coastal waters. The model system is composed of two PC Programmes that compute the local and regional, respectively, holding capacity of a locality with respect to fish farming. The first PC Programme, MOM 2.0, makes computations of the local holding capacity with respect to oxygen conditions at the bottom beneath the farm and in the fish cages. The second PC Program, FjordEnv 3.3, makes computations regarding the holding capacity with respect to regional conditions that also account for other impact on the coastal environment. So far, computations are done only for salmon but new fish species will be included in the near future.

Logistics:

One computer for every 3-4 participants and trainees, with MOM 2.0 and FjordEnv 3.3 installed. MOM 2.0 and FjordEnv 3.3 will be supplied for the course, to be installed the day before training.

One data projector.

Resources:

Training session powerpoint presentation: http://www.biaoqiang.org/training/EIM/xiamen1.ppt http://www.biaoqiang.org/training/EIM/xiamen2.ppt http://www.biaoqiang.org/training/EIM/xiamen3.ppt http://www.biaoqiang.org/training/EIM/xiamen4.ppt http://www.biaoqiang.org/training/EIM/xiamen5.ppt

MOM model: Manual: http://www.biaoqiang.org/training/EIM/manual-MOM.doc Aditional bibliography: http://www.biaoqiang.org/training/EIM/FiskoHav5_1999.pdf FjordEnv model: Manual: http://www.biaoqiang.org/training/EIM/manual-FE.doc Aditional bibliography: http://www.biaoqiang.org/training/EIM/report-C40.pdf

http://www.biaoqiang.org/training/EIM/MOM-aquacul-2004.pdf

Student evaluation (1 - worst, 4 - best):

Replies: 6
Material: 3.3
Teaching: 3.0
Exercises: 3.1

UGOT
T3a 14.00-15.30 Shellfish Modelling

A.J.S. Hawkins, Xuelei Zhang, J.G.Ferreira

T3b 14.00-15.30 Environmental Impact Modelling

Anders Stigebrandt

  15.30-15.50 Afternoon tea
T3a 15.45-17.30 Shellfish Modelling

A.J.S. Hawkins, Xuelei Zhang, J. G. Ferreira

T3b 15.45-17.30 Environmental Impact Modelling

Anders Stigebrandt

Friday March 17th 2006 - Venue:Third Institute of Oceanography, Xiamen

  
Day 3 Morning
T4   Training - Sessions 4a and 4b in parallel (09.00-12.00)
T4a Remote Sensing

The remote sensing - land classification session will be aimed as a basic introduction to the subject. It will cover the basic aspects of the theory of land classification. Looking at what can be seen from different radiometric bands and how combinations of these help to differentiate land cover types. This will be followed by an overview of the steps involved in supervised and unsupervised land classification, and maybe a quick look at different methods of supervised classification. Finally a demonstration (interactive if technology is available) will be run using a subset of the Huangdun bay dataset.

Logistics:

One computer for every 3-4 participants and trainees, with ENVI installed.

One data projector.

Student evaluation (1 - worst, 4 - best):

Replies: 4
Material: 3.5
Teaching: 3.5
Exercises: 3.5

PML
T4b Economic Modelling

The economical modeling session will provide an overview of this topic, focusing on:

1. Estimating economically optimal production of cultured species subject to (i) financial costs of production and (ii) social costs (financial and external or waste costs) of production;
2. Establishing impacts on profits and employment by populating the costs of production and income from aquatic resources;
3. Using integrated ecological-economic modeling to (i) simulate changes in aquatic ecosystem habitat on economic levels of production and (ii) simulate impacts of changes in the levels of production on the aquatic ecosystem;
4. Determining broader socio-economic impacts of changing production and changing aquatic ecosystems.

Logistics:

One data projector.

Student evaluation (1 - worst, 4 - best):

Replies: 4
Material: 3.0
Teaching: 3.8
Exercises: 3.3

CSIR
T4a 9.00-10.30 Remote sensing Rory Hutson
T4b 9.00-10.30 Economic Modelling CSIR
  10.30-10.45 Coffee break
T4a 10.45-12.00 Remote sensing Rory Hutson
T4b 10.45-12.00 Economic Modelling Martin de Wit
  12.00-14.00 Lunch break
Day 3 Afternoon
 T5   Training - Session 5a and 5b in parallel (14.00-17.30)
T5a Catchment Modelling

This session will present the SWAT catchment model. It will cover basic catchment modelling theory, and then move on to cover the major steps in setting up and running SWAT:
1. Catchment structuring;
2. Climate forcing;
3. Management parameterization.
Each step will involve a theoretical introduction followed by a hands-on demonstration for the Yangong river, near Ningbo; at the end of the session the trainees will have applied and run SWAT for this catchment.

Logistics:

One computer for every 3-4 participants and trainees, with ArcView (including the Spatial Analyst extention) and SWAT installed. SWAT will be supplied for the course, to be installed at least one day before training.

Student evaluation (1 - worst, 4 - best):

Replies: 6
Material: 3.5
Teaching: 3.6
Exercises: 3.4

IMAR
T5b Aquaculture

This short course will give basic information about the process of Environmental Impact Assessment and Management in relation to aquaculture site selection and monitoring, with examples of what is assessed, how it is assessed and why it is assessed. This will primarily be in the context of the Scottish Aquaculture industry, to show what can be done with subsequent discussion about environmental issues in the context of China. It will require participants to consider environmental management at the macro-scale (e.g. whole bay) taking in to consideration the micro-scale (single culture site). It will present methods of assessment, from collection of field data to collating local opinion in preparation for an Environmental Statement about a new culture site, analysis and presentation of results, the application process with examples from Scotland and elsewhere, and to discuss subsequent monitoring of sites. There will be the opportunity to watch a short video of life below a fish farm and it is hoped that participants will be eager to discuss potential environmental issues in relation to Chinese Aquaculture.

Logistics:

One data projector.

Student evaluation (1 - worst, 4 - best):

Replies: 3 for material and teaching, 1 for exercises
Material: 4.0
Teaching: 4.0
Exercises: 3

UoS
T5a 14.00-15.30 Catchment Modelling

João Nunes

T5b 14.00-15.30

Aquaculture - from field data collection to environmental management

Richard Corner

  15.30-16.00 Afternoon tea and group photo
T5a 16.00-17.30 Catchment Modelling

João Nunes

T5b 16.00-17.30

Aquaculture - from field data collection to environmental management

Richard Corner

 

 

   
   
   

Site developed by: IMAR-GEM - Institute for Marine Research - March 2006